Package: LOMAR 0.5.0

LOMAR: Localization Microscopy Data Analysis

Read, register and compare point sets from single molecule localization microscopy.

Authors:Jean-Karim Heriche [cre, aut]

LOMAR_0.5.0.tar.gz
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LOMAR.pdf |LOMAR.html✨
LOMAR/json (API)
NEWS

# Install 'LOMAR' in R:
install.packages('LOMAR', repos = c('https://jkh1.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.00 score 1 scripts 424 downloads 46 exports 72 dependencies

Last updated 1 months agofrom:f9e40bec30. Checks:OK: 9. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 27 2024
R-4.5-win-x86_64OKOct 27 2024
R-4.5-linux-x86_64OKOct 27 2024
R-4.4-win-x86_64OKOct 27 2024
R-4.4-mac-x86_64OKOct 27 2024
R-4.4-mac-aarch64OKOct 27 2024
R-4.3-win-x86_64OKOct 27 2024
R-4.3-mac-x86_64OKOct 27 2024
R-4.3-mac-aarch64OKOct 27 2024

Exports:apply_transformationary2psbinningcircle_hough_transformcoloc_indexcostWdcpdcrop_point_setdenoisedist_to_boundarydist_to_linedownsamplefind_elbowGaussian_Wdget_kernel_matrixget_persistence_diagramsget_shapeget_surface_areaGMM_WdgradientWdgroup_eventsicpidx2rowcolimg2psjrmpclocal_densitieslocprec2covlocs_from_csvlocs2psmultiple_registrationpoint_sets_from_locspoint_sets_from_tiffspoints_from_roipoints2imgps2arypsskrestore_coordinatesrotxrotyrotzscale_alpha_shapeshape_features_3dsliced_Wdstandardize_coordinatestrwgmmreg

Dependencies:abindalphashape3dbase64encBHBiocGenericsbitbitopsbslibcachemclicodetoolsdata.tabledbscandigestdoParallelEBImageevaluatefastmapfffftwtoolsFNNfontawesomeforeachfsgenericsgeometrygluehighrhtmltoolshtmlwidgetsiteratorsjpegjquerylibjsonliteknitrlatticelifecyclelinproglocfitlpSolvemagicmagrittrmclustmemoisemimeplyrpngpracmaproxyR6RANNrappdirsRcppRcppEigenRcppProgressRCurlreshape2rglrhdf5rhdf5filtersRhdf5librlangrmarkdownsassstringistringrtifftinytextransportvctrsxfunyaml

Readme and manuals

Help Manual

Help pageTopics
apply_transformationapply_transformation
ary2psary2ps
binningbinning
Circle Hough transformcircle_hough_transform
coloc_indexcoloc_index
costWdcostWd
cpdcpd
crop_point_setcrop_point_set
denoisedenoise
dist_to_boundarydist_to_boundary
dist_to_linedist_to_line
downsampledownsample
find_elbowfind_elbow
Gaussian_WdGaussian_Wd
get_kernel_matrixget_kernel_matrix
get_persistence_diagramsget_persistence_diagrams
get_shapeget_shape
get_surface_areaget_surface_area
GMM_WdGMM_Wd
gradientWdgradientWd
group_eventsgroup_events
icpicp
idx2rowcolidx2rowcol
img2psimg2ps
jrmpcjrmpc
local_densitieslocal_densities
locprec2covlocprec2cov
locs_from_csvlocs_from_csv
locs2pslocs2ps
multiple_registrationmultiple_registration
point_sets_from_locspoint_sets_from_locs
point_sets_from_tiffspoint_sets_from_tiffs
points_from_roipoints_from_roi
points2imgpoints2img
ps2aryps2ary
psskpssk
Get derivative of 3D rotation matrix from quaternionq2dr
Convert quaternion to rotation matrix http://en.wikipedia.org/wiki/Quaternions_and_spatial_rotationq2r
restore_coordinatesrestore_coordinates
rotxrotx
rotyroty
rotzrotz
scale_alpha_shapescale_alpha_shape
shape_features_3dshape_features_3d
sliced_Wdsliced_Wd
standardize_coordinatesstandardize_coordinates
trtr
wgmmregwgmmreg